Bioconductor Functional enrichment

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clusterprofiler go enrichment functional enrichment

updated 7.3 years ago by Guangchuang Yu ★ 1.2k • written 7.3 years ago by Jack ▴ 20

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genesetenrichment functional enrichment enrichmentbrowser News

10.0 years ago Ludwig Geistlinger ▴ 80

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SPIA functional enrichment pathway topology pathway analysis bioconductor

10.6 years ago svlachavas ▴ 840

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Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Erik Wright ▴ 160

This has to do with the fact that some taxonomies reuse names at the same rank level. Common examples in the SILVA taxonomy are "Incertae S…

Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?) by a2a2ddrhaa • 0

For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…

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A: WGCNA sample size minimum: why?

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Popular Question to Peter Hickey ▴ 760